Hey Preet,
That's a good question, with a lot of information involved, actually! I'm so sorry that you still haven't been able to see your links in Linkscape. Most new sites and links will be indexed by our spiders and available in Linkscape and Open Site Explorer within 60 days, but some take even longer for a plethora of reasons, including crawl-ability of sites, the amount of inbound links to them, and the depth of pages in subdirectories. Just so you know, here's how we do our index: we take the last index, take the 10 billion URLs with the highest mozrank (with a fixed limit on some of the larger domains), and start crawling from the top-down until we've crawled 40,000,000,000 pages (which is about 1/4 of the amount in Google's index). Therefore, if the site is not linked to by one of these seed URLs (or one of the URLs linked to by them in the next update) then it won't show up in our index
We update our Linkscape Index every 3 to 5 weeks. Crawling the whole internet to look for links takes 2-3 weeks. And then we've got 1-2 weeks of processing to do on those links to determine which are the most important links etc. You can see a schedule of how often we update, and planned updates here: http://seomoz.zendesk.com/entries/345964-linkscape-update-schedule
Linkscape focuses on a breadth-first approach, and thus we nearly always have content from the homepage of websites, externally linked-to pages and pages higher up in a site's information hierarchy. However, deep pages that are buried beneath many layers of navigation are sometimes missed and it may be several index updates before we catch all of these.
If our crawlers or data sources are blocked from reaching those URLs, they may not be included in our index (though links that points to those pages will still be available). Finally, the URLs seen by Linkscape must be linked-to by other documents on the web or our index will not include them.
For now, the best thing you can do to help your domain become indexed is to work on link building for links from sites with high mozrank. If you need help with that, you may want to ask the PRO Q&A community here!
I hope this information helps! While the site and links may not be indexed yet, give it some time - maybe we'll see it in OSE next month.
Best of luck,
Aaron