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Thanks for the detailed response.  I really appreciate the feedback.

crvw,

Thanks for the fast response.  We actually have an HTML version of the site, which is automatically displayed if Flash is not enabled.  This seems to be working quite well, which is why I'm confused.  I would expect the spiders to ignore the Flash and pick up the HTML version when it is crawled.

The other interesting thing is that SiteExplorer sees all the links in www.myeyedr.com/index.aspx but not on www.myeyedr.com which is actually displaying index.aspx.  Shouldn't the results be the same?

I just ran the Site Explorer on my site (myeyedr.com) and it reported that there are no internal links on www.myeyedr.com or myeyedr.com.  However, there were 20 internal followed links on www.myeyedr.com/index.aspx.

I'm guessing this is hurting my SEO.  Any suggestions?