Hi Mike,
Hope all is well. There are two things that might have made this confusion. Either you have some outdated links somewhere on your website that are leading to the custom 404 page or some external link is pointing back to your website with a wrong URL or missing product. In order to find the link (I say so, because a crawler has to hit a link to crawl so there is definitely one), you can use tools like Ahrefs link analysis and see what is pointing where. export to an excel and filter based on a RegEx you'd make out a 404 generating pattern you already have with Moz or Google WMT. You find one and you'll know where they are coming from and how to fix them. You'd be able to write custom redirects in your htaccess if they are not many. If they are many though, htaccess could slow down your website and the best way would be a back-end base redirect either custom coded or through a plugin based on your platform. I would start from
- my error_logs in webserver logs and match them with WMT and Moz report.
- download CSV and import to excel or program of your choice
- filter based on the pattern
- Match it with where you've found the link through Ahref
- and Voila, now you know exactly how to clean them up
Hope this helps Mike,
Have a nice day,
Ali