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Links from these shallow sites probably won't help much for passing link juice (low authority presumably) but if they're getting traffic then you might want those visitors to see your flagship brand where you have the bulk of your content. In that case, it would benefit the visitor and therefore would be worth doing.
As always be careful with linking to your flag ship site if the shallow sites are linked to by spammy sites. It seems to already doing pretty well so taking chances for minimal benefit probably wouldn't be worth it.