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Recently I had that problem also mate.
Thing is if you have any server issues you might get 503.
If your site is on maintenance you might get 503.
If your site gets high traffic and goes down you might get a 503.
Best thing to do is check with Fetch as Google tool from WMT to see how Google sees it.
Hey there mate,
Sorry to hear that you are having issues. You can actually ask Screaming Frog to use more RAM. If you haven't done that yet please give it a go.
You can find more here http://www.screamingfrog.co.uk/seo-spider/user-guide/general/
If you want to crawl part of your site it can surely do that. You can exclude pages or whole sections.
Find more here http://www.screamingfrog.co.uk/seo-spider/user-guide/configuration/
Hope this helps!