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SiteLock

Exactly, I've been told that these problems surfaced around the time the firewall was put up. I've just removed the timthumb file and I'm working on disavowing the spammy links pointing to us. I'm considering ditching sitelock in the next few days and seeing if that helps at all. We were also looking at Sucuri as a firewall option as well.

This is a huge help. I spent some time yesterday going through the site and updating my links to https where possible. Those don't all appear to have indexed yet. The bit about the timthumb exploit is particularly helpful. My theme lets me disable that, and I can get rid of the timthumb php file. I'm still concerned that sitelock could be exaggerating the problem though, we started having these issues with google around when it was implemented.

It absolutely was very hacked. I'm currently in the process of submitting takedowns manually for those spam posts in google's index. The site has been cleaned up and relaunched since. Could these be harming the indexing of the homepage as well?

Hi Patrick

Thanks for taking a look. If I could ask, where are you seeing this noindex tag and what are you using to see it? I've got my homepage set up in the yoast seo plugin to index and follow, and I had also previously added a  into my header just to make sure. My suspicion is that the sitelock firewall installed on our site right now is blocking robots. Does this make any sense?

Thanks again

edit

This is a huge help. I spent some time yesterday going through the site and updating my links to https where possible. Those don't all appear to have indexed yet. The bit about the timthumb exploit is particularly helpful. My theme lets me disable that, and I can get rid of the timthumb php file. I'm still concerned that sitelock could be exaggerating the problem though, we started having these issues with google around when it was implemented.