HI Joe. Yes. Links still work flawlessly. And if you view page source, they look perfect.
Here's a button I just made in the theme.
http://starttheme2.wpengine.com/url-encoding/
If you hover over it you can see the url is perfect. But the url it's coded in the page like this:
https%3A%2F%2Fmoz.com%2Fabout%2Fteam%2Fbritney-muller
I'm not sure what plugin is causing this. If you want to have a look you most certainly are welcome to.
https://starttheme2.wpengine.com/wp-admin/
UN: demo
PW: St#rtTh#m#2018