Hello there!
Just to help Tawny clarify this.
In those reports, " Root Domain" means just the domain. In the case of Moz, it is moz.com. This also means that they are taking into account the whole site.
So, for example, consider that you have 3 pages:
On one hand, if every page has one separate link pointing, fron different sites. Let's say: example-1.com, my-blog.org and site-overseas.com
In the report, when checking for site.com, you'll fine 3 root domain links.
On the other hand, if every page ( just to keep it generalistic, but it could be applied for just onepage) gets a link from the same root domain, but from diffetent pages (let's say: site-A.net/page1, site-A.net/keyword-two and site-A/whatever) in the repport you'll see just **ONE **root domain link.
Can you see the difference?
Hope I've helped.
GR.